HL_8UVS_163

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8UVS|1|2A|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UVS_163 not in the Motif Atlas

Homologous match to HL_8VTW_052

Geometric discrepancy: 0.0617

The information below is about HL_8VTW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8UVS|1|2A|C|2248
8UVS|1|2A|U|2249
8UVS|1|2A|G|2250
8UVS|1|2A|OMG|2251
8UVS|1|2A|G|2252
8UVS|1|2A|G|2253
8UVS|1|2A|C|2254
8UVS|1|2A|G|2255
8UVS|1|2A|G|2256

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2x

Transfer RNA; tRNA