HL_8UX8_010

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

8UX8|1|1|U|321, 8UX8|1|1|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_010 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1034

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8UX8|1|1|G|319
8UX8|1|1|A|320
8UX8|1|1|U|321
8UX8|1|1|A|322
8UX8|1|1|C|323

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L4