HL_8UX8_026

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8UX8|1|1|U|958, 8UX8|1|1|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_026 not in the Motif Atlas

Geometric match to HL_9DFE_025

Geometric discrepancy: 0.1703

The information below is about HL_9DFE_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8UX8|1|1|PSU|955
8UX8|1|1|G|956
8UX8|1|1|C|957
8UX8|1|1|U|958
8UX8|1|1|A|959
8UX8|1|1|A|960
8UX8|1|1|C|961
8UX8|1|1|G|962

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16