HL_8UX8_040

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

8UX8|1|1|A|1616, 8UX8|1|1|6MZ|1618

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_040 not in the Motif Atlas

Geometric match to HL_9DFE_038

Geometric discrepancy: 0.1048

The information below is about HL_9DFE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8UX8|1|1|C|1612
8UX8|1|1|G|1613
8UX8|1|1|A|1614
8UX8|1|1|C|1615
8UX8|1|1|A|1616
8UX8|1|1|C|1617
8UX8|1|1|6MZ|1618
8UX8|1|1|G|1619

Current chains

Chain 1

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34