HL_8UX8_094

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8UX8|1|2|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_094 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.368

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8UX8|1|2|G|1134
8UX8|1|2|U|1135
8UX8|1|2|C|1136
8UX8|1|2|C|1137
8UX8|1|2|G|1138
8UX8|1|2|G|1139
8UX8|1|2|C|1140

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS9