HL_8UX8_097

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_097 not in the Motif Atlas

Geometric match to HL_4LFB_029

Geometric discrepancy: 0.3371

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UX8|1|2|C|1314
8UX8|1|2|U|1315
8UX8|1|2|G|1316
8UX8|1|2|C|1317
8UX8|1|2|A|1318
8UX8|1|2|A|1319
8UX8|1|2|C|1320
8UX8|1|2|U|1321
8UX8|1|2|C|1322
8UX8|1|2|G|1323

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain s

Small ribosomal subunit protein uS14

Chain x

Small ribosomal subunit protein uS19