HL_8UX8_098

3D structure

PDB id

8UX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the +1 mRNA reading frame

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8UX8|1|2|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UX8_098 not in the Motif Atlas

Geometric match to HL_4LFB_030

Geometric discrepancy: 0.1263

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8UX8|1|2|G|1356
8UX8|1|2|A|1357
8UX8|1|2|U|1358
8UX8|1|2|C|1359
8UX8|1|2|A|1360
8UX8|1|2|G|1361
8UX8|1|2|A|1362
8UX8|1|2|A|1363
8UX8|1|2|U|1364
8UX8|1|2|G|1365
8UX8|1|2|C|1366

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS9

Chain o

Small ribosomal subunit protein uS10

Chain s

Small ribosomal subunit protein uS14