HL_8UXA_006

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUAACAAAU

Length

9 nucleotides

Bulged bases

8UXA|1|A|U|348

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_006 not in the Motif Atlas

Geometric match to HL_4V9F_061

Geometric discrepancy: 0.2918

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8UXA|1|A|A|347
8UXA|1|A|U|348
8UXA|1|A|A|349
8UXA|1|A|A|350
8UXA|1|A|C|351
8UXA|1|A|A|352
8UXA|1|A|A|353
8UXA|1|A|A|354
8UXA|1|A|U|355

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m

Chain b

Large ribosomal subunit protein mL59