HL_8UXA_007

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_007 not in the Motif Atlas

Geometric match to HL_7MKY_002

Geometric discrepancy: 0.1229

The information below is about HL_7MKY_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8UXA|1|A|C|393
8UXA|1|A|G|394
8UXA|1|A|U|395
8UXA|1|A|A|396
8UXA|1|A|A|397
8UXA|1|A|G|398

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein mL41

Chain D

Large ribosomal subunit protein uL4m

Chain Y

Large ribosomal subunit protein bL34m