HL_8UXA_009
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 8UXA|1|A|A|473
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UXA_009 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.1353
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8UXA|1|A|U|465
8UXA|1|A|U|466
8UXA|1|A|U|467
8UXA|1|A|U|468
8UXA|1|A|G|469
8UXA|1|A|U|470
8UXA|1|A|A|471
8UXA|1|A|U|472
8UXA|1|A|A|473
8UXA|1|A|A|474
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL3m
- Chain J
- Large ribosomal subunit protein uL15m
- Chain N
- Large ribosomal subunit protein bL21m
- Chain W
- Large ribosomal subunit protein bL32m
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