HL_8UXA_020

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUUA

Length

5 nucleotides

Bulged bases

8UXA|1|A|A|1255, 8UXA|1|A|U|1257

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_020 not in the Motif Atlas

Geometric match to HL_8DP3_002

Geometric discrepancy: 0.2132

The information below is about HL_8DP3_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8UXA|1|A|U|1254
8UXA|1|A|A|1255
8UXA|1|A|U|1256
8UXA|1|A|U|1257
8UXA|1|A|A|1258

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein mL43

Chain J

Large ribosomal subunit protein uL15m

Chain N

Large ribosomal subunit protein bL21m