HL_8UXA_024

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACUCAG

Length

8 nucleotides

Bulged bases

8UXA|1|A|A|1566, 8UXA|1|A|U|1568, 8UXA|1|A|A|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_024 not in the Motif Atlas

Geometric match to HL_7A0S_040

Geometric discrepancy: 0.1477

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8UXA|1|A|C|1564
8UXA|1|A|G|1565
8UXA|1|A|A|1566
8UXA|1|A|C|1567
8UXA|1|A|U|1568
8UXA|1|A|C|1569
8UXA|1|A|A|1570
8UXA|1|A|G|1571

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein mL41

Chain O

Large ribosomal subunit protein uL22m

Chain Y

Large ribosomal subunit protein bL34m