HL_8UXA_034

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGGGGCGU

Length

9 nucleotides

Bulged bases

8UXA|1|A|G|2276

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_034 not in the Motif Atlas

Geometric match to HL_4V9F_055

Geometric discrepancy: 0.1345

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8UXA|1|A|A|2274
8UXA|1|A|U|2275
8UXA|1|A|G|2276
8UXA|1|A|G|2277
8UXA|1|A|G|2278
8UXA|1|A|G|2279
8UXA|1|A|C|2280
8UXA|1|A|G|2281
8UXA|1|A|U|2282

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain AM

Transfer RNA; tRNA

Chain K

Large ribosomal subunit protein uL16m

Chain R

Large ribosomal subunit protein bL27m