HL_8UXA_036

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAAAUU

Length

6 nucleotides

Bulged bases

8UXA|1|A|A|2330, 8UXA|1|A|U|2331

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_036 not in the Motif Atlas

Geometric match to HL_5UD5_001

Geometric discrepancy: 0.1896

The information below is about HL_5UD5_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8UXA|1|A|A|2327
8UXA|1|A|A|2328
8UXA|1|A|A|2329
8UXA|1|A|A|2330
8UXA|1|A|U|2331
8UXA|1|A|U|2332

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein mL38

Chain 6

Large ribosomal subunit protein mL46

Chain R

Large ribosomal subunit protein bL27m