HL_8UXA_041

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_041 not in the Motif Atlas

Geometric match to HL_9E6Q_046

Geometric discrepancy: 0.163

The information below is about HL_9E6Q_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8UXA|1|A|C|2641
8UXA|1|A|G|2642
8UXA|1|A|U|2643
8UXA|1|A|A|2644
8UXA|1|A|A|2645
8UXA|1|A|G|2646

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein mL38

Chain E

Large ribosomal subunit protein uL5m

Chain b

Large ribosomal subunit protein mL59