HL_8UXA_042

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUUGUAAA

Length

10 nucleotides

Bulged bases

8UXA|1|A|A|2673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_042 not in the Motif Atlas

Geometric match to HL_9DFE_057

Geometric discrepancy: 0.1287

The information below is about HL_9DFE_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8UXA|1|A|U|2671
8UXA|1|A|G|2672
8UXA|1|A|A|2673
8UXA|1|A|U|2674
8UXA|1|A|U|2675
8UXA|1|A|G|2676
8UXA|1|A|U|2677
8UXA|1|A|A|2678
8UXA|1|A|A|2679
8UXA|1|A|A|2680

Current chains

Chain A

Large ribosomal subunit rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL15m

Chain b

Large ribosomal subunit protein mL59