HL_8UXA_055

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUGAAAUAUA

Length

11 nucleotides

Bulged bases

8UXA|1|AL|U|334, 8UXA|1|AL|U|336

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_055 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.3574

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8UXA|1|AL|U|327
8UXA|1|AL|C|328
8UXA|1|AL|U|329
8UXA|1|AL|G|330
8UXA|1|AL|A|331
8UXA|1|AL|A|332
8UXA|1|AL|A|333
8UXA|1|AL|U|334
8UXA|1|AL|A|335
8UXA|1|AL|U|336
8UXA|1|AL|A|337

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AB

Small ribosomal subunit protein mS41

Chain v

Small ribosomal subunit protein bS16m