HL_8UXA_060

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_060 not in the Motif Atlas

Homologous match to HL_6CZR_216

Geometric discrepancy: 0.2856

The information below is about HL_6CZR_216

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8UXA|1|AL|C|636
8UXA|1|AL|A|637
8UXA|1|AL|G|638
8UXA|1|AL|U|639
8UXA|1|AL|C|640
8UXA|1|AL|G|641

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain r

Small ribosomal subunit protein uS12m