HL_8UXA_065

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGCAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_065 not in the Motif Atlas

Homologous match to HL_6CZR_091

Geometric discrepancy: 0.1505

The information below is about HL_6CZR_091

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8UXA|1|AL|A|962
8UXA|1|AL|G|963
8UXA|1|AL|C|964
8UXA|1|AL|A|965
8UXA|1|AL|A|966
8UXA|1|AL|U|967

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AA

Small ribosomal subunit protein mS38

Chain u

Small ribosomal subunit protein uS15m