HL_8UXA_075

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

8UXA|1|AM|G|18, 8UXA|1|AM|G|19, 8UXA|1|AM|A|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_075 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.5918

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8UXA|1|AM|C|13
8UXA|1|AM|A|14
8UXA|1|AM|G|15
8UXA|1|AM|U|16
8UXA|1|AM|U|17
8UXA|1|AM|G|18
8UXA|1|AM|G|19
8UXA|1|AM|U|20
8UXA|1|AM|A|21
8UXA|1|AM|G|22

Current chains

Chain AM

Small ribosomal subunit tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA