HL_8UXA_077

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXA_077 not in the Motif Atlas

Homologous match to HL_9MTS_103

Geometric discrepancy: 0.4352

The information below is about HL_9MTS_103

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8UXA|1|AM|G|53
8UXA|1|AM|U|54
8UXA|1|AM|U|55
8UXA|1|AM|C|56
8UXA|1|AM|G|57
8UXA|1|AM|A|58
8UXA|1|AM|A|59
8UXA|1|AM|U|60
8UXA|1|AM|C|61

Current chains

Chain AM

Small ribosomal subunit tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain E

Large ribosomal subunit protein uL5m

Chain V

Large ribosomal subunit protein bL31m