3D structure

PDB id
8UXB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGUCGAAAAA
Length
10 nucleotides
Bulged bases
8UXB|1|1|C|747, 8UXB|1|1|A|751, 8UXB|1|1|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8UXB_022 not in the Motif Atlas
Geometric match to HL_4WF9_023
Geometric discrepancy: 0.1073
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50204.1
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
11

Unit IDs

8UXB|1|1|U|744
8UXB|1|1|G|745
8UXB|1|1|U|746
8UXB|1|1|C|747
8UXB|1|1|G|748
8UXB|1|1|A|749
8UXB|1|1|A|750
8UXB|1|1|A|751
8UXB|1|1|A|752
8UXB|1|1|A|753

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32
Chain d
50S ribosomal protein L34

Coloring options:


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