HL_8UXB_076

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8UXB|1|2|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXB_076 not in the Motif Atlas

Geometric match to HL_4LFB_008

Geometric discrepancy: 0.2859

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8UXB|1|2|A|320
8UXB|1|2|A|321
8UXB|1|2|C|322
8UXB|1|2|U|323
8UXB|1|2|G|324
8UXB|1|2|A|325
8UXB|1|2|G|326
8UXB|1|2|A|327
8UXB|1|2|C|328
8UXB|1|2|A|329
8UXB|1|2|C|330
8UXB|1|2|G|331
8UXB|1|2|G|332
8UXB|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20