HL_8UXB_080

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8UXB|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXB_080 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2013

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8UXB|1|2|G|462
8UXB|1|2|U|463
8UXB|1|2|U|464
8UXB|1|2|A|465
8UXB|1|2|A|466
8UXB|1|2|U|467
8UXB|1|2|A|468
8UXB|1|2|C|469
8UXB|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains