HL_8UXB_082

3D structure

PDB id

8UXB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8UXB_082 not in the Motif Atlas

Geometric match to HL_4LFB_014

Geometric discrepancy: 0.1565

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_92337.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8UXB|1|2|G|617
8UXB|1|2|C|618
8UXB|1|2|U|619
8UXB|1|2|C|620
8UXB|1|2|A|621
8UXB|1|2|A|622
8UXB|1|2|C|623

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4

Chain u

30S ribosomal protein S16