HL_8UXB_104
3D structure
- PDB id
- 8UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8UXB_104 not in the Motif Atlas
- Geometric match to HL_4GCW_002
- Geometric discrepancy: 0.3378
- The information below is about HL_4GCW_002
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8UXB|1|5|G|53
8UXB|1|5|U|54
8UXB|1|5|U|55
8UXB|1|5|C|56
8UXB|1|5|A|57
8UXB|1|5|A|58
8UXB|1|5|A|59
8UXB|1|5|U|60
8UXB|1|5|C|61
Current chains
- Chain 5
- tRNA^ProL (GGG)
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: