HL_8V03_076

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8V03|1|2|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V03_076 not in the Motif Atlas

Geometric match to HL_4LFB_008

Geometric discrepancy: 0.2632

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8V03|1|2|A|320
8V03|1|2|A|321
8V03|1|2|C|322
8V03|1|2|U|323
8V03|1|2|G|324
8V03|1|2|A|325
8V03|1|2|G|326
8V03|1|2|A|327
8V03|1|2|C|328
8V03|1|2|A|329
8V03|1|2|C|330
8V03|1|2|G|331
8V03|1|2|G|332
8V03|1|2|U|333

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20