HL_8V03_081

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V03_081 not in the Motif Atlas

Geometric match to HL_4LFB_033

Geometric discrepancy: 0.1912

The information below is about HL_4LFB_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8V03|1|2|C|522
8V03|1|2|A|523
8V03|1|2|G|524
8V03|1|2|C|525
8V03|1|2|C|526
8V03|1|2|G|527

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12