HL_8V84_013

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCCUCGGUA

Length

10 nucleotides

Bulged bases

8V84|1|1|C|546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_013 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.4849

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V84|1|1|U|541
8V84|1|1|G|542
8V84|1|1|C|543
8V84|1|1|C|544
8V84|1|1|U|545
8V84|1|1|C|546
8V84|1|1|G|547
8V84|1|1|G|548
8V84|1|1|U|549
8V84|1|1|A|550

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain S

Large ribosomal subunit protein eL20A