HL_8V84_017

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_017 not in the Motif Atlas

Geometric match to HL_5FJC_002

Geometric discrepancy: 0.0925

The information below is about HL_5FJC_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8V84|1|1|C|732
8V84|1|1|G|733
8V84|1|1|C|734
8V84|1|1|A|735
8V84|1|1|A|736
8V84|1|1|G|737

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain w

Ribosomal RNA-processing protein 1