HL_8V84_020

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAGAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_020 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2211

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8V84|1|1|G|910
8V84|1|1|C|911
8V84|1|1|A|914
8V84|1|1|A|915
8V84|1|1|G|916
8V84|1|1|A|917
8V84|1|1|C|918

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains