HL_8V84_040

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8V84|1|1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V84_040 not in the Motif Atlas

Geometric match to HL_5TBW_070

Geometric discrepancy: 0.2047

The information below is about HL_5TBW_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8V84|1|1|G|3303
8V84|1|1|U|3304
8V84|1|1|A|3305
8V84|1|1|U|3306
8V84|1|1|A|3307
8V84|1|1|C|3308
8V84|1|1|G|3309
8V84|1|1|A|3310
8V84|1|1|C|3311

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain B

Large ribosomal subunit protein uL3

Chain P

60S ribosomal protein L17-A