HL_8V87_027
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGAUG
- Length
- 6 nucleotides
- Bulged bases
- 8V87|1|1|G|1354, 8V87|1|1|U|1356
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_027 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2756
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
8V87|1|1|U|1347
8V87|1|1|U|1348
8V87|1|1|G|1354
8V87|1|1|A|1355
8V87|1|1|U|1356
8V87|1|1|G|1357
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
Coloring options: