3D structure

PDB id
8V87 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.66 Å

Loop

Sequence
UUGAUG
Length
6 nucleotides
Bulged bases
8V87|1|1|G|1354, 8V87|1|1|U|1356
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8V87_027 not in the Motif Atlas
Geometric match to HL_4OOG_001
Geometric discrepancy: 0.2756
The information below is about HL_4OOG_001
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_56334.1
Basepair signature
cWW-F
Number of instances in this motif group
16

Unit IDs

8V87|1|1|U|1347
8V87|1|1|U|1348
8V87|1|1|G|1354
8V87|1|1|A|1355
8V87|1|1|U|1356
8V87|1|1|G|1357

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain E
60S ribosomal protein L6-A
Chain Q
60S ribosomal protein L18-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0654 s