HL_8V87_031

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_031 not in the Motif Atlas

Geometric match to HL_5TBW_033

Geometric discrepancy: 0.0985

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8V87|1|1|G|1544
8V87|1|1|A|1545
8V87|1|1|A|1546
8V87|1|1|G|1547
8V87|1|1|C|1548
8V87|1|1|U|1549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal subunit assembly/export protein LOC1

Chain N

Large ribosomal subunit protein eL15A

Chain j

60S ribosomal protein L37-A