HL_8V87_032
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAUUUUAUGC
- Length
- 10 nucleotides
- Bulged bases
- 8V87|1|1|A|1566, 8V87|1|1|U|1569, 8V87|1|1|U|1570, 8V87|1|1|A|1571, 8V87|1|1|G|1573
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|G|1565
8V87|1|1|A|1566
8V87|1|1|U|1567
8V87|1|1|U|1568
8V87|1|1|U|1569
8V87|1|1|U|1570
8V87|1|1|A|1571
8V87|1|1|U|1572
8V87|1|1|G|1573
8V87|1|1|C|1574
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 6
- ITS2 RNA
- Chain Z
- 60S ribosomal protein L27-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain n
- Pescadillo homolog
- Chain t
- Ribosome biogenesis protein RLP7
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