HL_8V87_037

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8V87|1|1|C|1762, 8V87|1|1|U|1763, 8V87|1|1|U|1764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_037 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.1252

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8V87|1|1|C|1759
8V87|1|1|A|1760
8V87|1|1|C|1761
8V87|1|1|C|1762
8V87|1|1|U|1763
8V87|1|1|U|1764
8V87|1|1|U|1765
8V87|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A