HL_8V87_038

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

8V87|1|1|G|1794, 8V87|1|1|U|1795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_038 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1884

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8V87|1|1|C|1792
8V87|1|1|C|1793
8V87|1|1|G|1794
8V87|1|1|U|1795
8V87|1|1|G|1796

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3