HL_8V87_039

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8V87|1|1|A|1864, 8V87|1|1|A|1865, 8V87|1|1|C|1866

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_039 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2861

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8V87|1|1|U|1862
8V87|1|1|G|1863
8V87|1|1|A|1864
8V87|1|1|A|1865
8V87|1|1|C|1866
8V87|1|1|A|1867
8V87|1|1|G|1868

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 8

Nucleolar complex protein 2

Chain R

60S ribosomal protein L19-A