HL_8V87_040

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGGA

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_040 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1382

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8V87|1|1|U|2129
8V87|1|1|G|2130
8V87|1|1|G|2323
8V87|1|1|A|2324

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10

Chain y

Eukaryotic translation initiation factor 6