HL_8V87_041

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8V87|1|1|G|2371, 8V87|1|1|A|2372, 8V87|1|1|A|2373, 8V87|1|1|G|2376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_041 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2347

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8V87|1|1|G|2369
8V87|1|1|G|2370
8V87|1|1|G|2371
8V87|1|1|A|2372
8V87|1|1|A|2373
8V87|1|1|C|2374
8V87|1|1|G|2375
8V87|1|1|G|2376
8V87|1|1|G|2377
8V87|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain s

Nuclear GTP-binding protein NUG1