HL_8V87_043

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAG

Length

4 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_043 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3248

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8V87|1|1|C|2840
8V87|1|1|G|2841
8V87|1|1|A|2847
8V87|1|1|G|2848

Current chains

Chain 1

25S ribosomal RNA

Nearby chains