HL_8V87_045
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAUUGUUCACC
- Length
- 11 nucleotides
- Bulged bases
- 8V87|1|1|G|2922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_045 not in the Motif Atlas
- Geometric match to HL_7KI3_001
- Geometric discrepancy: 0.2075
- The information below is about HL_7KI3_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.8
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 23
Unit IDs
8V87|1|1|G|2918
8V87|1|1|A|2919
8V87|1|1|U|2920
8V87|1|1|U|2921
8V87|1|1|G|2922
8V87|1|1|U|2923
8V87|1|1|U|2924
8V87|1|1|C|2925
8V87|1|1|A|2926
8V87|1|1|C|2927
8V87|1|1|C|2928
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain b
- Nucleolar GTP-binding protein 1
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