HL_8V87_047

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8V87|1|1|G|2966

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_047 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1288

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8V87|1|1|C|2963
8V87|1|1|G|2964
8V87|1|1|U|2965
8V87|1|1|G|2966
8V87|1|1|A|2967
8V87|1|1|G|2968

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2