HL_8V87_054

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UAGCCGUUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V87_054 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.3286

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

8V87|1|1|U|3346
8V87|1|1|A|3347
8V87|1|1|G|3348
8V87|1|1|C|3349
8V87|1|1|C|3350
8V87|1|1|G|3356
8V87|1|1|U|3357
8V87|1|1|U|3358
8V87|1|1|A|3359

Current chains

Chain 1

25S ribosomal RNA

Nearby chains