HL_8V87_059
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUUUGG
- Length
- 6 nucleotides
- Bulged bases
- 8V87|1|6|U|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V87_059 not in the Motif Atlas
- Geometric match to HL_5LYS_002
- Geometric discrepancy: 0.1154
- The information below is about HL_5LYS_002
- Detailed Annotation
- UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_61337.1
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 49
Unit IDs
8V87|1|6|C|37
8V87|1|6|U|38
8V87|1|6|U|39
8V87|1|6|U|40
8V87|1|6|G|41
8V87|1|6|G|42
Current chains
- Chain 6
- ITS2 RNA
Nearby chains
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
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