HL_8V9J_004

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9J_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2048

The information below is about HL_4WF9_004

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8V9J|1|A|A|134
8V9J|1|A|G|135
8V9J|1|A|U|136
8V9J|1|A|G|137
8V9J|1|A|A|138
8V9J|1|A|U|139
8V9J|1|A|G|140
8V9J|1|A|U|141

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L29

Chain V

50S Ribosomal Protein L23