HL_8V9J_009

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUGAUACCGGGUAGGGGUUG

Length

21 nucleotides

Bulged bases

8V9J|1|A|U|285, 8V9J|1|A|C|291, 8V9J|1|A|U|302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8V9J|1|A|U|283
8V9J|1|A|G|284
8V9J|1|A|U|285
8V9J|1|A|G|286
8V9J|1|A|A|287
8V9J|1|A|U|288
8V9J|1|A|A|289
8V9J|1|A|C|290
8V9J|1|A|C|291
8V9J|1|A|G|292
8V9J|1|A|G|293
8V9J|1|A|G|294
8V9J|1|A|U|295
8V9J|1|A|A|296
8V9J|1|A|G|297
8V9J|1|A|G|298
8V9J|1|A|G|299
8V9J|1|A|G|300
8V9J|1|A|U|301
8V9J|1|A|U|302
8V9J|1|A|G|303

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9