HL_8V9J_092

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUCCUUG

Length

9 nucleotides

Bulged bases

8V9J|1|a|U|827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9J_092 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2195

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8V9J|1|a|C|820
8V9J|1|a|C|821
8V9J|1|a|U|822
8V9J|1|a|U|823
8V9J|1|a|C|824
8V9J|1|a|C|825
8V9J|1|a|U|826
8V9J|1|a|U|827
8V9J|1|a|G|828

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain r

30S Ribosomal Protein S18