HL_8V9J_104
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCAGCAACGC
- Length
- 12 nucleotides
- Bulged bases
- 8V9J|1|a|A|1345, 8V9J|1|a|C|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8V9J_104 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1507
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.2
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8V9J|1|a|G|1338
8V9J|1|a|A|1339
8V9J|1|a|U|1340
8V9J|1|a|C|1341
8V9J|1|a|A|1342
8V9J|1|a|G|1343
8V9J|1|a|C|1344
8V9J|1|a|A|1345
8V9J|1|a|A|1346
8V9J|1|a|C|1347
8V9J|1|a|G|1348
8V9J|1|a|C|1349
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S Ribosomal Protein S14
Coloring options: