HL_8V9L_009

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUGAUACCGGGUAGGGGUUG

Length

21 nucleotides

Bulged bases

8V9L|1|A|U|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8V9L_009 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3123

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8V9L|1|A|U|283
8V9L|1|A|G|284
8V9L|1|A|U|285
8V9L|1|A|G|286
8V9L|1|A|A|287
8V9L|1|A|U|288
8V9L|1|A|A|289
8V9L|1|A|C|290
8V9L|1|A|C|291
8V9L|1|A|G|292
8V9L|1|A|G|293
8V9L|1|A|G|294
8V9L|1|A|U|295
8V9L|1|A|A|296
8V9L|1|A|G|297
8V9L|1|A|G|298
8V9L|1|A|G|299
8V9L|1|A|G|300
8V9L|1|A|U|301
8V9L|1|A|U|302
8V9L|1|A|G|303

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9